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Function that reads and validates an annotated germline SNV/InDel file from CPSR pre-reporting pipeline

Source: R/input_data.R
load_germline_snv_indel.Rd

Function that reads and validates an annotated germline SNV/InDel file from CPSR pre-reporting pipeline

Usage

load_germline_snv_indel(fname = NA, ref_data = NULL, settings = NULL)

Arguments

fname

Path to file name

ref_data

Object with PCGR/CPSR reference data

settings

Object with CPSR report configuration