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Function that appends multiple HTML annotation links to variant identifiers e.g. COSMIC, CLINVAR, REFSEQ etc

Source: R/variant_annotation.R
append_annotation_links.Rd

Function that appends multiple HTML annotation links to variant identifiers e.g. COSMIC, CLINVAR, REFSEQ etc

Usage

append_annotation_links(var_data_df, vartype = "snv_indel", skip = NULL)

Arguments

var_data_df

data frame with variant entries

vartype

'snv_indel' or 'cna', or 'exp'

skip

elements to be ignored during annotation