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Function that assigns tier classifications to somatic CNA segments and SNVs/InDels, based on the presence of biomarker evidence found in the variant set

Source: R/variant_classification.R
assign_amp_asco_tiers.Rd

Function that assigns tier classifications to somatic CNA segments and SNVs/InDels, based on the presence of biomarker evidence found in the variant set

Usage

assign_amp_asco_tiers(
  vartype = "snv_indel",
  primary_site = "Any",
  variants_df = NULL,
  biomarker_items = NULL
)

Arguments

vartype

variant type ('snv_indel' or 'cna')

primary_site

primary tumor site

variants_df

data frame with variants (SNVs/InDels or CNAs)

biomarker_items

data frame with biomarker evidence items