Function that sets gnomAD_AF_ABOVE_TOLERATED to TRUE for variants if any gnomAD population frequency exceeds max_tolerated_af

Function that sets gnomAD_AF_ABOVE_TOLERATED to TRUE for variants if any gnomAD population frequency exceeds max_tolerated_af

Usage

assign_germline_popfreq_status(sample_calls, max_tolerated_af = 0.01)

Arguments

sample_calls

data frame with variants

max_tolerated_af

max tolerated germline allele frequency

Value

sample_calls