Function that assigns a SOMATIC_CLASSIFICATION to variants based on evidence found in variant set, potentially limited by user-defined options — assign_somatic_classification • PCGR

Function that assigns a SOMATIC_CLASSIFICATION to variants based on evidence found in variant set, potentially limited by user-defined options

Usage

assign_somatic_classification(sample_calls, settings)

Arguments

sample_calls: data frame with putative somatic variants
settings: PCGR run/configuration settings

Value

sample_calls