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Build column definitions for oncogenicity table with category-aware styling

Source: R/render_table.R
build_oncogenicity_col_defs.Rd

This function generates a list of column definitions for a reactable table that displays oncogenicity annotations. It applies specific styling to the SYMBOL and SAMPLE_ALTERATION columns based on cancer association rank and ClinVar classification, respectively. The ONCOGENICITY column is styled with background colors corresponding to oncogenicity categories. The function also ensures that only relevant columns are shown, while others are hidden, and that styling lookup columns are not displayed in the table.

Usage

build_oncogenicity_col_defs(data, primary_cols, symbol_rank_col)

Arguments

data

The data frame containing the oncogenicity annotations and styling lookup columns.

primary_cols

Character vector of column names that should be considered primary and kept visible in the table.

symbol_rank_col

Name of the column in data that contains the cancer association rank used for styling the SYMBOL column (default: "TISSUE_ASSOC_RANK").

Value

A list of column definitions that can be passed to the colDef