Clean extracted evidence data from OncoKB
Usage
clean_oncokb_evidence(
evidence_df = NULL,
gene = NA,
oncokb_root_gene = NA,
alteration = NA,
vartype = NA,
profile_name = NA,
oncotree_code = NA
)Arguments
- evidence_df
data.frame with OncoKB evidence
- gene
gene symbol
- oncokb_root_gene
root gene symbol from OncoKB annotation (for reference)
- alteration
name of alteration
- vartype
variant type (e.g., "snv_indel", "fusion", "cna")
- profile_name
molecular profile name (for display)
- oncotree_code
OncoTree code for tumor type