Extract diagnostic implications from OncoKB annotation

Extract diagnostic implications from OncoKB annotation

Usage

extract_diagnostic_evidence(
  oncokb_annotation = NULL,
  gene = NA,
  alteration = NA,
  vartype = NA,
  oncotree_code = NA,
  variant_id = NA,
  match_by = "hgvsp"
)

Arguments

oncokb_annotation

OncoKB annotation list

gene

Gene symbol (e.g., "BRAF")

alteration

Alteration description (e.g., HGVSp short format for SNVs/InDels)

vartype

Variant type (e.g., "snv_indel", "fusion", "cna")

oncotree_code

OncoTree code for tumor type (e.g., "BRCA" for breast cancer)

variant_id

Variant identifier

match_by

Matching strategy for SNVs/InDels (e.g., "hgvsp", "genomic")

Value

Tibble with diagnostic evidence items