Fetch OncoKB annotation for copy number alteration

Fetch OncoKB annotation for copy number alteration

Usage

fetch_oncokb_cna_annotation(
  hugo_symbol = NULL,
  cna_type = NULL,
  oncotree_code = NULL,
  oncokb_token = NULL
)

Arguments

hugo_symbol

Gene symbol

cna_type

Type of CNA: "Amplification" or "Deletion"

oncotree_code

OncoTree code/name (e.g., "SKIN", "BREAST")

oncokb_token

OncoKB API token

Value

List containing the complete JSON response from OncoKB API