Fetch OncoKB annotation for gene fusion
Usage
fetch_oncokb_fusion_annotation(
hugo_symbol_a = "EML4",
hugo_symbol_b = "ALK",
oncotree_code = "LUNG",
oncokb_token = NULL,
base_api_url = NULL,
structural_variant_type = "FUSION",
is_functional_fusion = TRUE
)Arguments
- hugo_symbol_a
First gene in fusion (5' partner)
- hugo_symbol_b
Second gene in fusion (3' partner)
- oncotree_code
OncoTree code/name (e.g., "SKIN", "BREAST")
- oncokb_token
OncoKB API token
- base_api_url
Optional base URL for OncoKB API (default: oncokb_base_api_url)
- structural_variant_type
Type of structural variant (default: "FUSION")
- is_functional_fusion
Whether fusion is functional (default: TRUE)