Fetch OncoKB annotation for SNV/InDel via genomic change — fetch_oncokb_genomic_annotation • PCGR

Fetch OncoKB annotation for SNV/InDel via genomic change

Usage

fetch_oncokb_genomic_annotation(
  hgvsg = "7:g.140753336A>T",
  oncotree_code = NULL,
  variant_origin = "somatic",
  oncokb_token = NULL,
  base_api_url = NULL,
  reference_genome = "GRCh38"
)

Arguments

hgvsg: Genomic change in HGVSg format (e.g., "7:g.140753336A>T")
oncotree_code: Tumor type name
variant_origin: somatic/germline
oncokb_token: OncoKB API token
base_api_url: Optional base URL for OncoKB API (default: oncokb_base_api_url)
reference_genome: Genome build, either "GRCh37" or "GRCh38" (default: "GRCh38")

Value

List containing the complete JSON response from OncoKB API