Fetch OncoKB annotation for SNV/InDel via protein change — fetch_oncokb_hgvsp_annotation • PCGR

Fetch OncoKB annotation for SNV/InDel via protein change

Usage

fetch_oncokb_hgvsp_annotation(
  hugo_symbol = "BRAF",
  protein_change = "V600E",
  oncotree_code = "SKIN",
  oncokb_token = NULL,
  base_api_url = NULL,
  reference_genome = "GRCh38"
)

Arguments

hugo_symbol: Gene symbol (e.g., "BRAF")
protein_change: Protein change in short format (e.g., "V600E")
oncotree_code: OncoTree code/name (e.g., "SKIN", "BREAST")
oncokb_token: OncoKB API token
base_api_url: Optional base URL for OncoKB API (default: oncokb_base_api_url)
reference_genome: Genome build, either "GRCh37" or "GRCh38" (default: "GRCh38")

Value

List containing the complete JSON response from OncoKB API