Function that generates data for rainfall plot (mutation density along genome, considering SNVs only)

Function that generates data for rainfall plot (mutation density along genome, considering SNVs only)

Usage

generate_report_data_rainfall(
  variant_set,
  colors = NULL,
  autosomes = FALSE,
  build = NULL,
  color_palette = pcgrr::color_palette
)

Arguments

variant_set

data frame with SNVs/InDels (must contain "CHROM", "POS","REF","ALT")

colors

character vector of six color codes (denoting the different mutation types)

autosomes

logical indicating if plotting should only consider autosomes

build

genome assembly (grch37/grch38)