Function that generates mutational signatures data for PCGR report

Usage

generate_report_data_signatures(
  variant_set = NULL,
  vstats = NULL,
  ref_data = NULL,
  settings = NULL,
  n_bootstrap_iterations = 200,
  sig_contribution_cutoff = 0.01
)

Arguments

variant_set: Somatic callset (SNV)
vstats: Variant statistics object
ref_data: PCGR reference data object
settings: PCGR run/configuration settings
n_bootstrap_iterations: Number of bootstrap iterations for signature analysis
sig_contribution_cutoff: Minimal signature contribution for reporting