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Function that reads and validates fully annotated CNA data (segments and genes) from PCGR pre-reporting pipeline

Source: R/input_data.R
load_somatic_cna.Rd

Function that reads and validates fully annotated CNA data (segments and genes) from PCGR pre-reporting pipeline

Usage

load_somatic_cna(
  fname_cna_segment = NULL,
  fname_cna_gene = NULL,
  ref_data = NULL,
  settings = NULL
)

Arguments

fname_cna_segment

Path to file with pre-processed CNA segments

fname_cna_gene

Path to file with pre-processed CNA gene-level data

ref_data

PCGR reference data object

settings

PCGR run/configuration settings