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Function that reads and validates an annotated somatic SNV/InDel file from PCGR pre-reporting pipeline

Source: R/input_data.R
load_somatic_snv_indel.Rd

Function that reads and validates an annotated somatic SNV/InDel file from PCGR pre-reporting pipeline

Usage

load_somatic_snv_indel(fname = NA, ref_data = NULL, settings = NULL)

Arguments

fname

Path to file with pre-processed somatic SNV/InDel variants

ref_data

PCGR reference data object

settings

PCGR run/configuration settings