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Function that matches variants to evidence items

Usage

match_eitems_to_var(
  sample_calls,
  db = "civic",
  colset = NULL,
  eitems = NULL,
  region_marker = T
)

Arguments

sample_calls

data frame with variant calls

db

database with evidence items ('civic','cgi')

colset

character vector with column names to pull out from sample_calls

eitems

raw list of evidence items

region_marker

logical indication if region biomarkers are to be matched or not