Plot allele-specific copy number segments

Function that plots allele-specific copy number segments (minor + total allele copies)

Usage

plot_cna_segments(
  chrom_coordinates = NULL,
  cna_segment = NULL,
  cna_gene = NULL
)

Arguments

chrom_coordinates

data frame with assembly-specific chromosome coordinate data (length etc)

cna_segment

data frame with annotated copy number segments

cna_gene

data frame with gene-level copy number data