Function that generates a pie chart for exonic/non-exonic variant statistics (for callsets coming from tumor-only sequencing)

Usage

plot_filtering_stats_exonic(
  report = NULL,
  plot_margin_top = 50,
  plot_margin_bottom = 20,
  plot_margin_left = 20,
  plot_margin_right = 20,
  font_family = "Helvetica",
  font_size = 15,
  pie_line_width = 3,
  opacity_filtered_categories = 0.4,
  hole_size_pie = 0.4
)

Arguments

report: list object with PCGR report content
plot_margin_top: top margin of the plot
plot_margin_bottom: bottom margin of the plot
plot_margin_left: left margin of the plot
plot_margin_right: right margin of the plot
font_family: font family for plot text
font_size: font size for plot text
pie_line_width: line width for pie chart segments
opacity_filtered_categories: opacity for filtered categories
hole_size_pie: size of the hole in the pie chart

Value

filtering_stats list with data frame and plotly pie chart